Invest Clin 65(2): 230 - 252, 2024 https://doi.org/10.54817/IC.v65n2a09
Corresponding Author: Diego Fernández-Lázaro. Department of Cellular Biology, Genetics, Histology
and Pharmacology, Faculty of Health Sciences, University of Valladolid, Campus of Soria, Soria, Spain.
E-mail: diego.fernadez.lazaro@uva.es
Mechanisms of programmed cell death:
structural and functional pathways.
A narrative review.
Diego Fernández-Lázaro
1,2,3
,
Begoña Sanz
4,5
and Jesús Seco-Calvo
3,4,6
1
Department of Cellular Biology, Genetics, Histology and Pharmacology, Faculty
of Health Sciences, University of Valladolid, Campus of Soria, Soria, Spain.
2
Neurobiology Research Group, Faculty of Medicine, University of Valladolid, Valladolid,
Spain.
3
SARCELLOMICS® Research Group, León, Spain.
4
Department of Physiology, University of the Basque Country, Leioa, Spain.
5
Biocruces Bizkaia Health Research Institute, Barakaldo Spain.
6
Institute of Biomedicine, University of León, León, Spain.
Keywords: apoptosis; caspases; mitochondrial/intrinsic pathway; extrinsic pathway;
necroptosis; autophagy.
Abstract. Apoptosis, necroptosis, and autophagy are cellular mechanisms
by which cells are programmed to die under various physiological and devel-
opmental stimuli. A multitude of protein mediators of programmed cell death
have been identified, and apoptosis, necroptosis, and autophagy signals have
been found to utilize common pathways that elucidate the proteins involved.
This narrative review focuses on caspase-dependent and caspase-independent
programmed cell death systems. Including studies of caspase-dependent pro-
grammed cell death, extrinsic pathway apoptotic mechanisms, phosphatidyl-
serine (PS), FAS (APO-1/CD95), tumor necrosis factor (TNF) receptor type
1 (TNF-R1) and TNF-related apoptosis-inducing ligand (TRAIL), and intrinsic
or mitochondrial pathway such as cytochrome C, the Bcl-2 family of proteins
and Smac/Diablo. The Bcl-2 family has apoptotic mediators Bcl-2-associated X
protein (Bax) and Bcl-2 homologous antagonist/killer (Bak), Bcl-2-interacting
protein BIM (Bim), Bcl-2 agonist of cell death (Bad), Bid, Bcl-2 adenovirus E1B
19kDa-interacting protein 1 NIP3 (Bnip3), BMF, HRK, Noxa and PUMA and an-
tiapoptotic proteins such as Bcl-2 itself, Mcl-1, Bcl-w, A1, and Bcl-XL. Moreover,
caspase-independent programmed cell death pathways include the mitochon-
drial pathway with the protein mediators apoptosis inducing factor (AIF) and
endonuclease G, and the pathways necroptosis, and autophagy. Understanding
programmed cell death from those reported in this review could shed substan-
Mechanisms of programmed cell death. A narrative review 231
Vol. 65(2): 230 - 252, 2024
Mecanismos de muerte celular programada: vías estructurales
y funcionales. Una revisión narrativa.
Invest Clin 2024; 65 (2): 230 – 252
Palabras clave: apoptosis; caspasas; vía mitocondrial/intrínseca; vía extrínseca;
necroptosis; autofagia.
Resumen. La apoptosis, la necroptosis y la autofagia son mecanismos celu-
lares mediante los cuales las células se programan para morir bajo una amplia
gama de estímulos fisiológicos. Esta revisión describe en los sistemas de muerte
celular programada dependientes e independientes de la caspasa. Los estudios
incluidos sobre la muerte celular programada dependiente de la caspasa inclu-
yen mecanismos apoptóticos de la vía extrínseca que incluyen fosfatidilserina
(PS), FAS (APO-1/CD95), receptor del factor de necrosis tumoral (FNT) tipo
1 (FNT-R1) e inductor de la apoptosis relacionada con ligando FNT (TRAIL)
y vía intrínseca o mitocondrial como el citocromo C, la familia de proteínas
Bcl-2 y Smac/Diablo. La familia Bcl-2 tiene mediadores apoptóticos, proteína
X asociada a Bcl-2 (Bax) y antagonista/asesino homólogo de Bcl-2 (Bak), pro-
teína BIM que interactúa con Bcl-2 (Bim), agonista de la muerte celular de
Bcl-2 (Bad), Bid, proteína 1 que interactúa con el adenovirus E1B 19kDa de
Bcl-2, NIP3 (Bnip3), BMF, HRK, Noxa y PUMA y proteínas antiapoptóticas como
la propia Bcl-2, Mcl-1, Bcl-w, A1 y Bcl-XL. Además, las vías de muerte celular
programada independientes de la caspasa incluyen la vía mitocondrial con los
mediadores proteicos factor inductor de apoptosis (FIA) y endonucleasa G, las
vías necroptosis y autofagia. Comprender la muerte celular programada a partir
de los contenidos descritos en esta revisión podría arrojar luz sustancial sobre
los procesos de la homeostasis biológica y podría proporcionar la capacidad de
modular la respuesta de muerte celular programada y conducir a nuevas inter-
venciones terapéuticas en una amplia gama de enfermedades.
Received: 19-10-2023 Accepted: 18-11-2023
INTRODUCTION
Every hour, billions of cells die in us,
and our tissues do not shrink because of a
natural regulation whereby cell death is
balanced by cell division. It is necessary to
control both death and cell division in dif-
ferentiated cells to balance the different cell
populations, avoiding affecting the adjacent
cells
1
.
The process in which cells eliminate
themselves in a controlled manner is called
tial light on the processes of biological homeostasis. In addition, identifying
specific proteins involved in these processes is mandatory to identify molecular
biomarkers and therapeutic targets. Furthermore, it could provide the ability to
modulate the programmed cell death response and could lead to new therapeu-
tic interventions in a disease.
232 Fernández-Lázaro et al.
Investigación Clínica 65(2): 2024
programmed cell death. Programmed cell
death plays an important role during em-
bryonic development, maintaining tissue
homeostasis in the body and eliminating
damaged cells
2
. In contrast, excessive or
defective cell death contributes to a broad
spectrum of human pathologies. Low-rate
cell death can result in the formation of
cancer and autoimmune diseases
3
, whereas
high-rate cell death can result in neurode-
generative disease, immunodeficiency, or
muscle atrophy
4
.
Knowledge of specific/differential pro-
teomic expression in each cell death is es-
sential for the early detection, diagnosis, and
prognosis of cell-death-related diseases. This
knowledge is also crucial for the use of more
precise and personalized pharmacological
treatments
5
. Cell death can be divided into
three groups: programmed, regulated, and
accidental
6
. Programmed cell death is pres-
ent in embryonic development and tissue
homeostasis, such as apoptosis and necrop-
tosis. Regulated cell death is that which, pro-
grammed or not, can be induced or inhibited
by a specific molecular mechanism through
pharmacology or genetic interventions, for
example, the release of neutrophil extracel-
lular traps (NETs), a regulated form of neu-
trophil cell death known as NETosis, modu-
lates neutrophil toxic effects. Accidental cell
death is triggered by external physical condi-
tions, such as ischemia, freeze-thaw cycles,
or high concentrations of pro-oxidants, an
example of this type of death are oncosis and
necrosis
6
. Two mechanisms of programmed
cell death are distinguished: apoptotic cell
death, dependent on caspases such as extrin-
sic and intrinsic apoptosis, and non-apoptot-
ic cell death, independent of caspases, such
as autophagy and necroptosis
7
.
MATERIALS AND METHODS
Search strategy
The present study is a narrative lit-
erature review comprising scientific stud-
ies conducted between May and July 2023
that sought to group and describe caspase-
dependent and caspase-independent pro-
grammed cell death, describing the molecu-
lar mechanisms of apoptosis, necroptosis,
and autophagy. The bibliographic search was
carried out in the following electronic data-
bases: Medline (PubMed), Sci-ELO, Scopus,
Science Direct, Cinahl, EMBASE - Excerpta
Medica Data Base, LILACS, Google Scholar,
Dialnet, and Cochrane Library Plus. The key-
words used for the search were: programmed
cell death, apoptosis, caspases, caspase in-
hibitory proteins, mitochondrial / intrinsic
pathway, extrinsic pathway, necroptosis, au-
tophagy, phosphatidylserine, FAS (APO-1/
CD95), tumor necrosis factor (TNF) recep-
tor type 1 (TNF-R1) and TNF-related apopto-
sis-inducing ligand (TRAIL) and cytochrome
C, linked by the Boolean operators “AND”
and “OR”. Additional records were gleaned
by conducting a ‘snowball’ search, checking
the reference lists of publications eligible
for full-text review, and using ResearchGate
to identify potential articles not included in
the databases used in the study.
Inclusion and exclusion criteria
The following inclusion criteria were
applied to select the articles: (1) Access to
the full text; (2) be a review, clinical trial,
observational study, or case report/study;
(3) identify caspase-dependent and cas-
pase-independent programmed cell death;
(4) describe the molecular mechanisms of
apoptosis, necroptosis, and autophagy; (6)
studies whose publication date is from the
beginning of the databases until July 2023;
(6) languages were restricted to English,
German, French, Italian, Spanish, and Por-
tuguese. The exclusion criteria applied were:
(2) Publications not related to programmed
cell death and/or describe its molecular
mechanisms; (2) duplicate documents.
Data extraction
After searching the databases for stud-
ies, the search titles were checked to iden-
tify duplicates and possible publications to
Mechanisms of programmed cell death. A narrative review 233
Vol. 65(2): 230 - 252, 2024
add. After reading the abstract, a full-text re-
view of the selected studies was performed.
Two reviewers (D.F.-L. and J.S.-C.) scruti-
nized and synthesized data from all selected
studies into a comprehensive table using a
standardized data extraction. A third review-
er (B.S.) resolved all disagreements between
them.
RESULTS AND DISCUSSION
Programmed Cell death
Apoptotic cell death functions individu-
ally and selectively and is executed through
a highly stereotyped series of biochemical
events that ensure rapid non-inflammatory
cell elimination. For this reason, the apop-
totic physiological process is produced and
characterized by decreased cell size, vesicle
formation, and condensation of the nucleus.
This series of transformations regulates the
control of morphogenesis and organogenesis
during embryonic development, in addition
to tissue homeostasis in adult organisms
8
.
Non-apoptotic cell death is usually de-
scribed as a secondary mechanism for defi-
cient apoptotic conditions. However, it is also
possible that non-apoptotic programmed
cell death mechanisms may function in first-
order lines; for example, autophagic cell
death is carried out during metamorphosis
in insects. This autophagic cell death elimi-
nates a tissue in its entirety
9
.
In 1972, Kerr et al.
8
coined the term
apoptosis to differentiate it from the death
of natural origin, necrosis. The word comes
from Greek, which refers to the leaves that
fall from the trees or the petals that fall from
the flowers. The prefix apo means “distance,
outside or part” and ptosis “fall,” which lit-
erally means “fall from”. Apoptosis is associ-
ated with caspases, a family of cysteine pro-
teases that control not only apoptosis but
also proliferation, differentiation, cell shape,
and cell migration.
Apoptosis is a form of programmed cell
death
10
, which occurs because of tissue and
cell aging or in response to different external
agents such as ionizing radiation and chemo-
therapeutic agents
10
. It can be considered a
process that facilitates the elimination of de-
fective cells, so the alteration in the regula-
tion of genes involved in cell death by apop-
tosis can cause and be associated with the
development of different neoplasms, autoim-
mune diseases, viral infections, and neurode-
generative diseases
11
. Apoptosis is an active
process where the cells react and execute
their death, programmed, by themselves
10
.
Apoptotic death is considered when a cell
has lost its individuality or reached a “point
of no return” at which the cell definitively
loses its function. Apoptotic cell death trig-
gers two stages. In the first stage, biochemi-
cal mediators attempt to repair a damaged
cell. If they fail, the cell enters the second
stage or execution phase, where structural
changes occur that lead the cell to death
12
. These structural changes affect the cell
membrane, intracytosolic organelles, and
the nucleus
8
. The cytoskeleton collapses,
the nuclear envelope disassembles, redis-
tributing the nuclear pores, the nuclear pro-
tein is altered, and the nuclear chromatin
condenses and fragments, becoming dense
clumps, with an electrophoretic “ladder”
pattern, which migrate towards the nuclear
membrane that shapes. DNA and RNA cleav-
age, due to the activation of Ca
2
+ and Mg
2
+
dependent endonucleases that cleave ge-
nomic DNA through the internucleosomal
spaces
13
. Also in the mitochondria, DNA de-
grades, and the endoplasmic reticulum los-
es its envelope; its cisterns widen and fuse
10
. The phospholipids of the cell membrane
change orientation and the phosphatidyl-
serine residues are exposed to the external
environment; the fragmentation of the phos-
pholipids is induced because of these disrup-
tions, the integrity of the plasma membrane
is lost, and the mitochondrial membrane
potential decreases. On the surface of the
plasma membrane, fragments of membrane-
enclosed cytoplasm called apoptotic bodies
protrude and are shed, which are cytoplas-
mic remnants surrounded by a membrane
234 Fernández-Lázaro et al.
Investigación Clínica 65(2): 2024
such that they are rapidly engulfed by an
adjacent cell or macrophage when released
into the external environment, without caus-
ing an inflammatory response
12,14,15
.
Caspases
Cysteine aspartate-specific proteases
(Caspases, EC 3.4.22.-) are synthesized as
inactive 30-50 kDa precursors (zymogens)
that have three domains: an amino-terminal
domain (prodomain), a domain that will re-
sult in a large subunit (p20) containing the
active site, and another domain that will end
in a smaller subunit catalyst (p10) C-ter-
minus
16
(Fig. 1). In the presence of appro-
priate stimuli, a proteolysis process occurs
between the domains, generating the active
fragments. There are two types of caspases:
initiator caspases (Caspase-2, 8, 9, and 10)
that are activated in response to signs of
stress or cell damage and that protect and
activate effector caspases (Caspase-3, 6, and
7), these will oversee the direct proteolysis
of different substrates that will lead to the
death of the cell. One of their first identified
substrates was Poly ADP-ribose polymerase
(PARP)
17,18
.
Initiator caspases present in their N-
terminal region one or two essential adapter
domains for their function. In contrast, ef-
fector caspases do not have these domains.
There are two fundamental ways caspases can
be activated (intrinsic and extrinsic path-
ways of caspase-dependent apoptosis), but
although both pathways converge on effec-
tor caspases, they require different caspases
to initiate the process. Thus, the activation
of the extrinsic pathway mainly causes the
recruitment of Caspase-8, and the intrinsic
pathway principally causes the recruitment
of Caspase-9
18,19
.
During the process of apoptosis, there
is a massive activation of caspases, which
specifically cut proteins in cysteine residues
located near aspartic acid. Caspases initi-
ate a cascade of events that converge into
a common effector caspase pathway that
leads to the execution of apoptosis
12,20
. The
apoptotic machinery of the cytoskeleton has
inactive precursors or initiating procaspases
8-10
that are activated by proteolytic cleavage
and are catalyzed by other already active cas-
pases; here, the process remains reversible.
When activated, the initiator procaspases
and cell-specific target proteins cleave and
activate the executor procaspases (3, 6, and
7). From Caspase-3, the process is irrevers-
ible
17,19
.
Apoptosis constitutes a complex series
of positive and negative events with mul-
tiple positive and negative regulators and
is integrated into other critical intracellu-
lar pathways such as cell cycle progression,
phosphorylation-mediated signals, and DNA
Fig. 1. Structure of Caspases.
CARD: caspase recruitment and activation domain; DED: Death Effector Domain; p20: large subunit (p20);
p10: small subunit (p10).
Caspases contain three domains: an N-terminal prodomain, a large subunit (p20) containing the active center
with cysteine within a conserved QACXG motif, and a small subunit (p10) at the C-terminus.
Mechanisms of programmed cell death. A narrative review 235
Vol. 65(2): 230 - 252, 2024
damage repair
6
. Apoptosis is carried out
mainly by two alternative pathways of apop-
tosis induction divided into i) apoptosis me-
diated by death receptors expressed on the
cell surface or extrinsic pathway; ii) apopto-
sis mediated by the mitochondrial or intrin-
sic pathway
18
. Signaling by both pathways
induces the activation of caspases, and each
pathway uses its own initiator caspases and
activation complex
12,20
.
Inhibitors of Apoptosis Proteins (IAPs)
Inhibitors of apoptosis proteins (IAPs)
could inhibit apoptosis by selectively bind-
ing and inhibiting Caspase-3 and Caspase-7,
but not Caspase-8. IAPs block the caspase
cascade and inhibit cell death in response to
proapoptotic stimuli
21
. There are currently
eight protein members of this family, but
two of them, survivin and X-linked inhibitor
of protein apoptosis (XIAP), are particularly
interesting. In this sense, survivin is the only
IAP associated with the mitotic spindle
22
. Its
expression depends on the cell cycle
23
. It has
a double function since it inhibits apoptosis
through direct and indirect interaction with
caspases and regulates the cell cycle
24
. Sur-
vivin is expressed in embryonic tissue and
is overexpressed in tumor cells, associated
with resistance to chemotherapy, but not in
normal adult tissues
24,25
. XIAP is possibly the
best-studied IAP both at the structural level
and at the level of its mechanism of action
26
.
Furthermore, XIAP is the only member
of this family that can inhibit both effector
and initiator caspases. XIAP is frequently el-
evated in tumor cells, leading to resistance
to chemotherapy
25
. Therefore, XIAP is an
optimal therapeutic target based on its func-
tions; moreover, the inhibition of XIAP re-
stores cellular chemosensitivity
27,28
.
Caspase-dependent pathways of apoptosis
Extrinsic pathway: recipients of death
The extrinsic pathway is activated by
ligands of the family of Tumor necrosis fac-
tor (TNF) proteins. Some ligands can induce
apoptosis; when they bind to their receptors,
they trigger caspase activation and initiate
apoptosis
29
. Death receptors are character-
ized by having cysteine-rich extracellular
domains. They all have in common a death
domain (DD) domain in the cytoplasmic re-
gion. In general, the binding of ligands to
death receptors induces their trimerization,
and subsequently, the DD domains recruit
adapter molecules that will activate Cas-
pase-8 and, when activated, activate Cas-
pase-3
30
. Extrinsic apoptosis is related to
death receptors on the plasma membrane,
such as phosphatidylserine (PS), FAS (APO-
1/CD95), TNF receptor type 1 (TNF-R1),
and TNF-related apoptosis-inducing ligand
(TRAIL)
31
.
Phosphatidylserine (PS)
In cells, the negatively charged PS is
only localized to the cytosolic side of the
lipid bilayer of the plasma membrane, but
when it is translocated to the outer mono-
layer of the cell, it acts as an “eat me” signal,
so it is considered as a marker of extrinsic
apoptosis. In addition to expressing signals
on the cell surface that stimulate apoptosis,
PS also blocks inflammation in the phago-
cytic cell by inhibiting the production of cy-
tokines proinflammatory signaling proteins
32
. It must be considered that apoptotic cells
must not only activate the signals that in-
duce cell death but also inactivate or lose
the death signals
12
.
Fas (APO-1/CD95)
Fas (APO-1 / CD95) is ubiquitously ex-
pressed on the cell’s surface as a membrane
protein of 40 kDa, which is highly expressed
in T lymphocytes and activated natural kill-
er (NK) cells
33
. The activation of Fas at the
cell surface is done by binding the Fas ligand
(FasL) to the surface of a cytotoxic lympho-
cyte. The death domains of the cytosolic tails
of Fas death receptors recruit adapter pro-
teins, which in turn recruit procaspase ini-
tiators such as procaspase-8, procaspase-10,
or both, forming the death-inducing signal-
236 Fernández-Lázaro et al.
Investigación Clínica 65(2): 2024
ing complex (DISC)
34
. In practice, once ac-
tivated in the DISC, the initiator caspases
activate the next executor procaspases in
the cascade, inducing apoptosis. This path-
way begins with the formation of the DISC
in which an adapter molecule called Fas as-
sociated death domain (FADD) and procas-
pase-8 intervene. FADD binds to Fas through
their respective DD domains and to pro-
caspase-8 through a death effector domain
(DED). The oligomerization of procaspase-8
in the DISC complex results in the activation
of Caspase-8 and subsequent activation of
other caspases. Depending on the cell type,
Caspase-8 can directly activate Caspase-3
or proteolyze the carboxy-terminus of BH3
interacting domain death agonist (Bid), a
proapoptotic protein from the Bcl-2 family.
Translocation of the truncated form of Bid
into the mitochondria will activate the mito-
chondrial pathway
35,36
(Fig. 2).
The Fas / Fas ligand (FasL) system par-
ticipates in the elimination of T and B lym-
phocytes, viruses-infected cells, and cancer
cells. Doxorubicin and methotrexate (cyto-
toxic agents) or immunomodulatory drugs
(IMiDs) activate this pathway to achieve cell
death in malignant cells in cancer disease
37
.
Furthermore, FasL can also interact
with the DcR receptor, a soluble secreted
receptor of the TNF superfamily. Some cells
produce “decoy” receptors on the cell sur-
face with a ligand-binding domain but no
death domain; therefore, they can bind to
a death ligand but do not trigger apoptosis.
When FasL binds to DcR3, it inhibits FasL/
Fas apoptotic activity, thus acting as a “de-
coy.” Cells can also produce intracellular
blocking proteins such as FADD-like IL-1β-
converting enzyme (FLICE)-inhibitory pro-
tein (FLIP), which resembles procaspase but
lacks a proteolytic domain; FLIP competes
Fig. 2. Extrinsic apoptotic pathway by FAS cell death receptors.
FAS is a cell surface receptor that, when binding to its ligand, causes apoptosis. (APO-1/CD95); FASL: Fas
ligand; FADD: Fas Associated Death Domain; DD: Death Domain; DED: Death Effector Domain; DISC:
Death-Inducing Signaling Complex; Bid: BH3 Interacting Domain Death Agonist Protein.
Diagram of apoptotic signals of the extrinsic pathway: mediated by FAS receptors of cell death. Caspase-8 can
directly activate Caspase-3 or proteolyze the carboxy-terminal end of Bid, a proapoptotic protein of
the Bcl-2 family. The translocation of the truncated form of Bid to the mitochondria will activate the
mitochondrial pathway.
Mechanisms of programmed cell death. A narrative review 237
Vol. 65(2): 230 - 252, 2024
with procaspases-8 and 10 for binding sites
on DISC and thus inhibits the activation of
these initiating procaspases
38,39
.
Tumor necrosis factor (TNF) receptor type
1
Tumor necrosis factor-α (TNF-α) is a
type II transmembrane protein that medi-
ates the inflammatory response, regulation
of immune cells, and cytotoxicity. TNF-α
binds to tumor necrosis factor receptor 1
(TNF-R1), also known as death receptor 1
(DR1), and tumor necrosis factor receptor
2 (TNF-R2). TNFR1 and TFNR2 are involved
in pro-survival signaling and proliferation by
activating the nuclear factor kappa B (NF-
kB) pathway
31,40
.
TNF-R1 can be found in all cell types,
and TNF-R2 is mainly expressed in immune
and endothelial cells
40
. TNF-R1 is ubiqui-
tously expressed, like Fas, whereas its ligand
TNF-α is only expressed on activated macro-
phages and lymphocytes in response to in-
fections
35
. TNF-R1 has a death domain that
can trigger apoptosis by activating the cas-
pase cascade. Upon activation, TNF binds
to its receptor via trimerization of TNFR1.
Subsequently, a TNFR-associated death do-
main protein (TRADD) adapter molecule is
added that induces association with FADD
and activation of Caspase-8. In addition to
the apoptotic pathway, TNF induces other
signal transduction pathways from TRADD
that trigger the activation of NF-κB and c-
Jun Kinase (JNK)/Ap-1
41,42
(Fig. 3).
TNF-Related Apoptosis-Inducing Ligand
(TRAIL)
TRAIL is a type II homotrimeric trans-
membrane protein expressed on the surface
of T cells, macrophages, and NK cells, mod-
ulating the immune response
31
. Zinc bind-
ing is essential for recognizing the receptor
and the subsequent induction of apoptosis
Fig. 3. Extrinsic apoptotic pathway by Tumor Necrosis Factor Receptor type 1 cell death receptors.
TNF: tumor necrosis factor; TNFR1: Tumor Necrosis Factor Receptor; TRADD: Tumor Necrosis Factor Recep-
tor (TNFR)-Associated Death Domain protein; RIPs: Receptor Interacting Proteins; FADD: Fas Associa-
ted Death Domain; Bid: BH3 Interacting Domain Death Agonist Protein.
Signaling pathway of the TNF receptor 1. TRADD adapter molecule is added, which induces the association
with FADD and the activation of Caspase-8.
238 Fernández-Lázaro et al.
Investigación Clínica 65(2): 2024
by stabilizing the trimeric conformation in
TRAIL residue Cys230, which is essential
43
.
When TRAIL binds to DRs, it induces recep-
tor trimerization, which triggers the extrin-
sic apoptotic pathway in transformed cells
without affecting non-transformed cells
44
.
TRAIL binds to two death receptors
(DR), DR 4 and DR5, and “three decoys
receptors” (DcR) (DcR1, DcR2, and osteo-
protegerin (OPG)). TRAIL-R1 or DR4 and
TRAIL-R2 or DR5, with 60% homology, can
trigger apoptosis and determine whether
a cell is resistant or sensitive to TRAIL
31
.
DcR1, or TRAIL-R3, is a GPI-anchored pro-
tein lacking the intracellular and transmem-
brane domains, while DcR2 or TRAIL-R4 has
an intracellular portion containing a trun-
cated DD; both receptors are unable to in-
duce apoptosis after binding of TRAIL
45,46
.
OPG is a soluble receptor that can be re-
leased from the cardiovascular system, gas-
trointestinal tract, lung, kidney, bone, and
immune cells
47
. OPG binds TRAIL and many
ligands, including another member of the
TNF family, the receptor activating nuclear
factor kB ligand (RANKL)
48
.
Intrinsic pathway: mitochondrial death
pathway
Intrinsic apoptosis is activated from
within the cell in response to injury or other
forms of stress, such as DNA damage, lack
of oxygen, UV radiation, nutrient or survival
signals, oxidizing agents, drugs, and growth
factors
49
(Fig. 4).
Although mitochondria were consid-
ered a passive element in apoptotic cell
death, which only reflected damage to
critical functions due to cell death
50
, this
apoptotic pathway depends on the release
Fig. 4. Potential signals of the activation of the intrinsic apoptotic pathway.
PBK: Protein kinase B; AKT: serine-threonine kinase (also known as protein kinase B (PKB) phosphorylated by
PDK1 kinase.; BAD: Bcl-2 agonist of cell death; BIM: B-cell lymphoma 2 interacting mediator of cell
death; BIMF: proapoptotic protein BIM family; BID: BH3-interacting domain death agonist; BCL-XL:
B-cell lymphoma-extra-large; BCL-2: B-cell lymphoma 2; BAX: bcl-2-like protein 4; NOXA: (Latin for
damage) is a proapoptotic member of the Bcl-2 protein family; p53: Tumor protein P53; PUMA: p53
upregulated modulator of apoptosis.
In signaling activation of the mitochondrial pathway of apoptosis, the BH3 domain is essential for apoptotic
activity. Proteins that inhibit apoptosis and/or promote cell survival include Bcl-2, and Bcl-XL, loca-
ted in the outer mitochondrial membrane, and the proteins Bim, Bad, Bid, Bimf, and Bax are found
mainly in the cytosol and can be translocated to mitochondria in response to apoptotic stimuli.
Mechanisms of programmed cell death. A narrative review 239
Vol. 65(2): 230 - 252, 2024
into the cytosol of mitochondrial proteins
that normally reside in the intermembrane
space
51
.
Cytochrome-C
Cytochrome C is a protein that partici-
pates in the electron transport chain located
in the intermembrane space of the mito-
chondria, and that can be used as a biomark-
er of the apoptosis process
1
. Cytochrome C,
performs an entirely different function; after
being released into the cytosol, it binds to
a procaspase-activating protein called apop-
totic protease-activating factor-1 (Apaf1),
causing the oligomerization of Apaf-1 into a
heptameric wheel-like structure called apop-
tosome
52
. In the apoptosome, Apaf1 pro-
teins recruit initiator procaspase molecules
(procaspase-9); these are activated into Cas-
pase-9 and induce an apoptotic cascade acti-
vating one of the following chain executing
procaspases-3, -6, and -7 inducing apopto-
sis
53
(Fig. 5).
Bcl-2 family proteins
Bcl-2 family of proteins controls and reg-
ulates the entire process of intrinsic apopto-
sis. Bcl-2 family proteins actively participate
in this pathway, which, through interactions
between them, regulates the permeabili-
zation of mitochondria and the release of
apoptogenic proteins into the cytosol
1
. The
Bcl-2 family of proteins contains at least one
conserved domain, known as Bcl-2 homology
domains (BH [BH1, BH2, BH3 and BH4]).
The proteins of the Bcl-2 family are classi-
fied based on their function and structure:
i) Antiapoptotic proteins, which contain the
domains BH1 and BH2; ii) Proapoptotic pro-
Fig. 5. Intrinsic pathway by Cytochrome C-mediated apoptosis.
Apaf-1: Apoptotic protease-activating factor 1; IAP: Inhibitors of Apoptosis Protein; PARP: Poly (ADP-ribose)
polymerase; BID: BH3 Interacting Domain Death Agonist; BIM: B-cell lymphoma 2 interacting me-
diator of cell death; BAD: Bcl-2 agonist of cell death; BCL-2: B-cell lymphoma 2; MCL-1: Induced
myeloid leukemia cell differentiation protein; BCL-XL: B-cell lymphoma-extra-large; BAX: bcl-2-like
protein 4; BAK: Bcl-2 homologous antagonist/killer; Smac / DIABLO: Second Mitochondria-derived
Activator of Caspase.
Release to the cytosol binds to the Apaf-1 protein and procaspase-9, forming the apoptosome complex, indu-
cing caspase-9 and the caspase activation cascade.
240 Fernández-Lázaro et al.
Investigación Clínica 65(2): 2024
teins containing the BH1, BH2, and BH3 do-
mains; iii) Proapoptotic proteins containing
only the BH3 domain
54
. Most of the antiapop-
totic members maintain sequence conserva-
tion in their four domains, while those with
proapoptotic activity have less conservation
of the first α-helix BH4 segment. Thus, the
proteins of the Bcl-2 family are proapoptotic,
and others are antiapoptotic. They can bind
to each other in various combinations and
form heterodimers in which the two proteins
mutually inhibit each other. However, when
a more significant proportion of these activi-
ties occur, the cell’s susceptibility to death
or survival is determined
55,56
.
Antiapoptotic proteins
Antiapoptotic Bcl-2 proteins, such as
Bcl-2 itself, Mcl-1, Bcl-w, A1, and Bcl-XL, are
found on the cytosolic surface of the outer
mitochondrial membrane, endoplasmic re-
ticulum, and nuclear envelope, where they
help maintain membrane integrity. This
group of proteins inhibits apoptosis and/
or promotes cell survival
54
. The three anti-
apoptotic proteins of the Bcl-2 family, Bcl-
2, Bcl-XL, and Mcl-1, prevent the activation
of the mitochondrial apoptosis pathway, as
demonstrated in multiple myeloma (MM)
37
.
In MM, the defect in the cell death pathways
is frequently due to an imbalance in the ex-
pression of the Bcl-2 family proteins. The
Bcl-2 gene has been implicated in resistance
to apoptosis induced by dexamethasone but
not melphalan in patients with MM. Bcl-XL
is expressed in most MM cell lines and cells
from patients; increased expression is fre-
quently detected in the relapsed patient and
correlates with resistance to chemotherapy.
Mcl-1 is expressed in virtually all MM lines
and fresh cells from patients. The induction
of apoptosis in MM cells has been related to
a decrease in the expression of Mcl-1
57
. Also,
for acute myeloid leukemia (AML), higher
expression of Bcl-2, Bcl-XL, and Mcl-1 and
lower expression of Bax increase resistance
to apoptosis in CD34+ populations than in
CD34- populations, mainly due to AML
58
.
Furthermore, increased expression of Bcl-
2 and Bcl-XL blocks doxorubicin-induced
apoptosis. Mcl-1 levels are increased in pa-
tients with recurrent AML
59
.
Pro-apoptotic Bcl2 proteins
Proapoptotic Bcl-2 proteins comprise
two subfamilies: the BH1-4 proteins that
share four different homology domains (Bcl-
2-associated X protein [Bax] and Bcl-2 ho-
mologous antagonist/killer [Bak] and the
proteins with restricted homology to BH3.
The BH3 domain is essential for apoptotic
function
60
. Among the members of the Bcl-2
family that induce apoptosis, with bounded
homology to the BH3 domain, the following
proteins are grouped: Bcl-2-interacting pro-
tein BIM (Bim), Bcl-2 agonist of cell death
(Bad), Bid, Bcl-2 adenovirus E1B 19kDa-
interacting protein 1 NIP3 (Bnip3), BMF,
HRK, Noxa and p53 upregulated modulator
of apoptosis (PUMA). These proteins are the
largest subclass of the Bcl-2 protein family
61
. Bak protein is tightly bound to the outer
membrane of the mitochondria even in the
absence of an apoptotic signal, whereas Bax
is localized primarily in the cytosol and only
translocates to the mitochondria if an apop-
totic signal is activated. Bax and Bak acti-
vation depend on activated “BH3 one” pro-
apoptotic proteins. Bax and Bak act on the
endoplasmic reticulum’s and nuclear mem-
branes’ surface; when activated in response
to endoplasmic reticulum stress, they re-
lease Ca
2+
from the endoplasmic reticulum
into the cytosol. Bax and Bad are essential
gateways for cell death through mitochon-
dria
61
. Restricted homology to BH3 proteins
provides the crucial link between the apop-
totic stimulus and the intrinsic apoptosis
pathway; its BH3 domain binds to a long hy-
drophobic groove of the Bcl-2 antiapoptotic
proteins and neutralizes or inhibits their ac-
tivity. In some cells, the extrinsic apoptotic
pathway recruits the intrinsic pathway by
amplifying the caspase cascade that kills the
cell. In this way, Bid is the link between the
Mechanisms of programmed cell death. A narrative review 241
Vol. 65(2): 230 - 252, 2024
two pathways. Also, Bid, Bim, and PUMA can
inhibit all Bcl-2 antiapoptotic proteins
62,63
.
Klee et al.
64
have investigated mitochondrial
membrane permeabilization, which depends
not only on the canonical mitochondrial Bak
and Bax pathway to activate the death pro-
gram. Therefore, these investigators have
also found that the “only-BH3” molecules,
Bim and PUMA, can induce the release of
cytochrome c and apoptosis with the mere
presence of Bak in the endoplasmic reticu-
lum
64
. This pathway for transmitting apop-
totic signals from the endoplasmic reticu-
lum to mitochondria involves coordinated
communication mediated by the calcium
and ER1α/TRAF2 ER-stress surveillance ma-
chinery
61,63,65
.
Second Mitochondria-derived Activator
of Caspase (Smac / Diablo)
Second mitochondria-derived activa-
tor of caspase (Smac / Diablo) binds by its
N-terminal end to the mitochondria and, in
the intermembrane space, proteolyzes, leav-
ing free the domain that allows its union
with the IAPs
66
. The loss of mitochondrial
potential simultaneously triggers the re-
lease of cytochrome-C and Smac/Diablo.
Smac/Diablo, in the cytoplasm, is capable
of binding to IAPs (XIAP, c-IAP1, c-IAP2, and
survivin), inhibiting their function and en-
hancing caspase activation and triggering
the mitochondrial apoptosis pathway
67
. The
release of Smac / Diablo is inhibited by Bcl-
2 and Bcl-xL
54
. In MM cells, Smac plays a
functional role in mediating the activation
and apoptosis of Caspase-9 induced by dexa-
methasone treatment
37
.
Caspase-independent pathways
of apoptosis
Mitochondrial caspase - independent
pathway
The loss of mitochondrial potential in-
creases the permeability of the mitochondri-
al membrane, and the result is the release of
these proteins, such as AIF (apoptosis-induc-
ing factor) and Endonuclease G (Endo-G)
that activate a caspase-independent apopto-
sis pathway
68
.
AIF (Apoptosis Inducing Factor)
Apoptosis-inducing factor (AIF) is a
highly phylogenetically conserved protein,
essential for embryonic development, which
is synthesized in the form of an immature
precursor; it is translocated to the mito-
chondria, and in the intermembrane space it
is proteolyzed, the mature form has oxidase
activity
69
. In response to death signals, AIF
leaves the mitochondria and travels through
the cytosol to the nucleus, where it binds to
DNA, causing chromatin condensation and
DNA fragmentation into fragments of ap-
proximately 50 kb
16
(Fig. 6). AIF is neces-
sary to induce PARP-dependent death. The
processing and activation of PARP occur in
response to DNA damage. PARP initiates a
signal in the nucleus that induces the re-
lease of AIF from the mitochondria. AIF then
moves from the mitochondria to the nucleus
and induces chromatin condensation and
DNA fragmentation
69,70
.
Endonuclease G (Endo-G)
Endonuclease G (Endo-G) is an essen-
tial protein for mitochondrial DNA replica-
tion. It was isolated from the mitochondrial
fraction treated with the proapoptotic active
form of Bid: tBid. Once released to the cyto-
sol, it is transferred to the nucleus, where it
fragments DNA, even in the presence of cas-
pase inhibitors (Fig, 6). Endo-G cooperates
with exonuclease and DNase, facilitating
DNA processing
71,72
. Apoptotic endonucle-
ase acts cooperatively to fragment DNA and
ensure the irreversibility of apoptosis. How-
ever, very little is known about the potential
regulatory linkages between endonucleases.
Therefore, deoxyribonuclease deactivation is
caused by cutting. Also, alternative splicing
of DNase I pre-mRNA skipping exon 4 occurs
in response to overexpression of Endo-G in
242 Fernández-Lázaro et al.
Investigación Clínica 65(2): 2024
cells
16,72
. Likewise, a strong correlation was
identified between the expression levels of
Endo-G and DNase I splice variants in human
lymphocytes. In fact, T cells downregulate
the mRNA levels of the active full-length DN-
ase I variant. They also upregulate the levels
of the inactive spliced variant, which acts in
a dominant-negative fashion
70,71
.
Necroptosis
Necroptosis is a form of programmed
cell death since it is genetically regulated;
it is characterized by cell inflammation, mi-
tochondria dysfunction, plasma membrane
permeabilization, and the release of cyto-
plasmic content into the extracellular space,
causing inflammatory reactions in the cells
of the surrounding tissue. This form of cell
death is also associated with mitochondrial
reactive oxygen species (ROS) and, unlike
apoptosis, does not involve DNA fragmen-
tation
73
. Necroptosis has been reported to
occur in a wide range of human diseases, in-
cluding retinal ischemia-reperfusion injury,
acute pancreatitis, brain trauma, retinal
detachment, and Huntington’s disease
73,74
.
In addition, necroptosis has been linked to
models of inflammation, including intestinal
inflammation and systemic inflammatory re-
sponse syndrome (SIRS)
75,76
. Perhaps the de-
tailed knowledge of this cell death pathway
can be used to develop drugs that temporar-
ily prevent or block this process to delay the
death of some types of cells or, conversely, it
could also serve to eliminate selectively, for
example, tumor cells
77
.
Activation Pathways of Necroptosis
Necroptosis is triggered as a form of
immunity against pathogens, under poor
conditions to trigger apoptosis. In necrop-
tosis, as in apoptosis, TNF activates TNFR1,
which induces the activation of a serine/
threonine kinase interaction protein (RIP1),
making integrating a joint inflammatory
and necroptotic response possible
78
. RIP3
is activated upon phosphorylation by the
serine/threonine kinase RIP1
79
. Necropto-
sis is RIP3-dependent as RIPK3 protein ki-
nase activity determines whether cells die
by apoptosis or necroptosis. Perhaps necrop-
tosis is fundamentally characterized by the
Fig. 6. Proapoptotic factors as Cytochrome-C, Smac/Diablo, Endonuclease, and Apoptosis Inducing Factor
are released from the mitochondria.
RIP3: Receptor-interacting serine/threonine-protein kinase 3; RIP1 Receptor-interacting serine/threonine-
protein kinase 1; FLIPs: FLICE-inhibitory proteins; FAAD: Fas-associated death domain protein.
In response to death signals, AIF leaves the mitochondria and moves through the cytosol to the nucleus,
where it binds to the DNA, causing chromatin condensation and DNA fragmentation.
Mechanisms of programmed cell death. A narrative review 243
Vol. 65(2): 230 - 252, 2024
activation of RIP1 or RIPK3, while the cas-
pase cascade is inhibited
79
. Giampietri et al.
80
have proposed a model that differentiates
the production of cell death by apoptosis
and by necroptosis; the dimerization of Cas-
pase-8 produces apoptosis while in necrop-
tosis it does not occur. The dimerization of
C-Flip S and caspase-8 produces a reduction
in caspase-8 activity, and it may not produce
either apoptosis or necroptosis, finally, the
heterodimerization of C-FLIPs and Caspase-8
produces inhibition of Caspase-8 and leads
to the production of necroptosis (Fig. 7).
Regulation Pathways of Necroptosis
Liu et al.
81
have shown that the Akt
and mTOR pathways regulate necroptosis by
inducing RIPK1 activation in neuronal cell
death. Just as it has also been verified that
necrostatin -1 is an inhibitor of all the bio-
chemical events carried out in this type of
cell death. In addition, other investigators
82
have reported that necroptosis is paired
with a mixed lineage kinase domain-like pro-
tein (MLKL) gene, an important substrate
of RIP3, and the plasma surface pores are
constituted by said protein (Fig. 8). These
pores cause the absorption of too much wa-
ter, so the cells ultimately burst. The block-
ade of MLKL activity leads to the inhibition
of necroptosis
82
. In this sense, Dondelinger
et al.
82
have proposed that a domain of four
activated MLKL molecules is required to
induce its oligomerization and trigger cell
death.
On the other hand, it has been found
that phosphatidylinositol (PIP) recruits the
MLKL protein to the plasma membrane.
Of note, recombinant MLKL lacks positive
charges and induces leakage of liposomes
containing both PIP and BAX, supporting a
model in which MLKL induces necroptosis
by directly permeabilizing the plasma mem-
brane. Consequently, inhibition of PIP for-
mation specifically inhibits TNF mediated by
necroptosis but not apoptosis
82
.
Autophagy
The term autophagy was introduced in
1996 by De Duve and Wattiaux, who defined
the vacuolization process for transporting
intracellular material to lysosomes for deg-
radation
83
. Autophagy is derived from the
Greek auto and phagos; it literally means
“self-feeding.” Its function mainly regulates
intracellular homeostasis since cytoplasmic
materials (long-lived proteins and damaged
organelles) are degraded in lysosomes and
recycled to produce new building blocks and
maintain energy metabolism
84
. From a mor-
phological point of view, autophagy has been
classified as a form of programmed cell death
associated with the massive accumulation of
autophagosomes in the cytoplasm, which
frequently, but not always, seems to be ac-
companied by increased blood flow; massive
autophagy triggers caspase-independent,
necrosis-like death
85
. It has been shown that
autophagy participates in natural processes
such as growth, embryonic development,
or aging. Also, it participates in the death
that occurs in mammary cells after lactation
and the death of some cancer cells that lack
apoptotic modulators, such as Bax and Bak
or caspases
85,86
. Dysfunction of this process
has been linked to cardiovascular and respi-
Fig. 7. Pathway of specific activation of necroptosis.
RIP3: Receptor-interacting serine/threonine-protein
kinase 3; RIP1 Receptor-interacting serine/
threonine-protein kinase 1; FLIPs: FLICE-in
-
hibitory proteins; FAAD: Fas-associated death
domain protein.
Necroptosis signaling pathways mainly comprise hete
-
rodimerization to c-FLIPs that reorganize the
catalytic site procaspase-8, producing caspa
-
se-8 inhibition, which induces necroptosis.
244 Fernández-Lázaro et al.
Investigación Clínica 65(2): 2024
ratory diseases, neurodegenerative diseases,
metabolic diseases, and cancer
86,87
.
Autophagy is a type of programmed cell
death since more than 30 genes have been
identified in yeast that regulate autophagy,
and it is seen as a survival mechanism to com-
bat environmental stress factors
88
. Autopha-
gy could be induced in response to oxidative
or metabolic stress and can also be induced
through starvation, which is very commonly
used in research
86
. On the other hand, to
demonstrate that cell death in an in vivo or
in vitro model is caused by autophagy, it is
necessary to demonstrate that said death is
inhibited by agents interrupting the autopha-
gic pathway
88
. These agents can be chemi-
cal (agents directed against VPS34), genetic
(siRNA 3-methyl-adenine), or modulators of
autophagy (AMBRA 1, ATG 5, beclin)
89
.
Types of autophagy
Three types of autophagy are identified: i)
macroautophagy; ii) microautophagy; iii) chap-
erone-mediated autophagy
84
. The macroau-
tophagy process, as described by Kwanten et al.
88
begins with the formation of a phagophore,
a double membrane structure (also known as
an isolation membrane) that sequesters cyto-
plasmic material (long-lived proteins and or-
ganelles), which subsequently elongates to cre-
ate an autophagosome. The autophagosome
fuses with a lysosome to form an autolysosome,
where its contents will be degraded by lyso-
somal proteases (e.g., cathepsins) and other
hydrolytic enzymes
90,91
. According to Kwanten
et al.
88,
phagophore formation is regulated by
the ULK1 complex (initiation), which is under
the control of the mammalian target of ram-
pamycin (mTOR) complex and the beclin-1/
VSP34 interaction complex (nucleation). Two
large, conjugated ubiquitin-like complexes
are responsible for double membrane elonga-
tion: light chain 3 (LC3)-II and ATG5-Atg12-
ATG16L1. ATG7 is one of the proteins required
to form both elongation complexes. Autopha-
gosomes are generated on or in the vicinity of
the endoplasmic reticulum. However, it is not
clear whether the ER membrane is used di-
rectly for autophagosome formation. Recent
studies suggest that additional membranes
derived from the Golgi complex, mitochondria,
and the plasma membrane also contribute
to autophagosome formation
90,91
. Therefore,
autophagosome formation involves multiple
and complex processes
84
. Macroautophagy is
considered to play the most critical role in au-
tophagy
92
(Fig. 9).
Fig. 8. Recruitment of Mixed Lineage Domain-Like Protein Kinase by Phosphatidylinositol. Pathway to the
plasma membrane.
MLKL: Mixed Lineage Domain-Like Protein Kinase
The MLKL protein has become a specific and crucial protein. The 4-Helical Bundle Domain (4HBD) in the
N-terminal region of MLKL is required to induce its oligomerization. and trigger cell death.
Mechanisms of programmed cell death. A narrative review 245
Vol. 65(2): 230 - 252, 2024
Microautophagy process is considered
when a small portion of the cytoplasm is di-
rectly involved by the lysosome / late endo-
some (Fig. 10). Autolysosome formation is
mediated by the accumulation of small mem-
brane structures that envelop portions of
the cytoplasm. Phagophores are not formed,
and membrane structures invaginate direct-
ly into lysosomes, where degradation occurs
by direct absorption of cytoplasmic cargo.
In Chaperone-Mediated Autophagy
(CMA), the proteins to be degraded are
delivered selectively to lysosomes; they are
recognized by heat shock-like proteins 70
(HSC70) and by co-chaperones; proteins
in the degradation phase are internalized
through lysosomal membrane-associated
protein 2A (LAMP2A)
91,92
(Fig. 11).
Autophagy: a selective process
Degradation in the autophagy process
was believed to be non-selective; however, it
has been determined that there are selective
pathways to digest specific components, such
as “mitophagy” or selective autophagy of mi-
tochondria
93
, “peroxyphagy” (peroxisomes),
“ribophagy” (ribosomes) or “xenophagy
(invading microbes), this phenomenon is
called selective autophagy, and in the case
of mitochondria, it serves to maintain their
homeostasis
70,84
. Thus, macroautophagy
can be non-selective (random uptake of in-
tracellular material) and selective (specific
load capture). The morphological and bio-
chemical characteristics of autophagy and
apoptosis are different. In this regard, cells
undergoing autophagy show an increase in
autophagic vesicles (autophagosomes and
autophagolysosomes). While chromatin
condensation is partial in autophagic cells,
DNA fragmentation does not occur. The two
processes, autophagy and apoptosis, are not
always mutually exclusive and can occur si-
multaneously in the same type of cells
91
.
In summary, homeostasis is maintained
between cells produced by mitosis and cell
death in the human body. In this sense, this
study is a narrative review that reports scien-
tific research in which an attempt has been
made to group programmed cell deaths,
explaining the molecular mechanisms that
involve structural and functional proteomic
pathways that intervene by inducing and
inhibiting each one of the proteomic path-
ways. In our study, caspase-dependent pro-
Fig. 9. Macroautophagy process from isolation membrane to autolysosome.
In the autolysosome, the inner membrane and luminal content of the autophagic vesicle are degraded by
lysosomal enzymes that act optimally within this acidic compartment.
Fig. 10. Endosomes result from the microautopha-
gy process.
Microautophagy is conserved from yeast to mam-
mals and contributes to the degradation of
organelles (e.g., peroxisomes, ER, nucleus),
protein complexes such as the proteasome,
and single proteins.
246 Fernández-Lázaro et al.
Investigación Clínica 65(2): 2024
grammed cell deaths and caspase-indepen-
dent programmed cell deaths are described.
Although classifying and describing pro-
grammed cell death processes is somewhat
complex, depending on which aspects are
analyzed, their grouping and knowledge of
the factors that trigger cell death vary great-
ly. This study could offer the basis for the de-
sign of new pharmacological treatments and
discover new potential molecular biomarkers
for early diagnosis that serve to cure or mod-
ulate the course of some diseases. For this,
it is necessary to understand the proteomic
signaling mechanisms of programmed cell
death since their alteration contributes to a
wide variety of diseases, one of which is can-
cer, which constitutes a global public health
problem due to its high mortality.
ACKNOWLEDGMENTS
The authors want to thank the SARCEL-
LOMICS® Research Group (Spain), for their
collaboration on infrastructure computer
support and for presenting their collabora-
tion in advising on the methodological de-
sign and interpretation of the results.
Funding
No funding was received.
Competing interests
The authors declare that they have no
competing interests.
ORCID numbers of authors
Diego Fernández-Lázaro (DFL):
0000-0002-6522-8896
Begoña Sanz (BS):
0000-0002-6354-6401
Jesús Seco-Calvo (JSC):
0000-0002-7818-9777
Authors’ contributions
DFL: searched and selected the litera-
ture and wrote the original draft. JSC and
BS conceived the study and reviewed and
edited the manuscript. DFL designed and
created the figures. Data authentication is
not applicable. All authors have read and ap-
proved the final manuscript.
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