© The Authors, 2021, Published by the Universidad del Zulia*Corresponding author: lhernandez@cibnor.mx
Keywords:
Streptomyces
Nocardiopsis
Antagonism
Solanum lycopersicum
Identication and morphological characterization of marine actinomycetes as biocontrol
agents of Fusarium solani in tomato
Identicación y caracterización morfológica de actinomicetos marinos como agentes de biocontrol
de Fusarium solani en tomate
Identicação e caracterização morfológica de actinomicetos marinhos como agentes de biocontrole
de Fusarium solani em tomate
Juan Antonio Torres-Rodriguez
1
Juan José Reyes-Pérez
2
Thelma Castellanos
1
Carlos Angulo
1
Evangelina Esmeralda Quiñones-Aguilar
3
Luis Guillermo Hernandez-Montiel
1
*
Rev. Fac. Agron. (LUZ). 2022, 39(1): e223915
ISSN 2477-9407
DOI: https://doi.org/10.47280/RevFacAgron(LUZ).v39.n1.15
Crop Production
Associate editor: Dra. Lilia Urdaneta
1
Centro de Investigaciones Biológicas del Noroeste, La Paz,
Baja California Sur, México.
2
Universidad Técnica Estatal de Quevedo, Quevedo, Los
Ríos, Ecuador.
3
Centro de Investigación y Asistencia en Tecnología y
Diseño del Estado de Jalisco, Guadalajara, México.
Received: 26-02-2021
Accepted: 09-07-2021
Published: 13-02-2022
Abstract
Fusarium spp. damages the roots of crops, its control is with synthetic
fungicides, however, marine actinomycetes can be an option to the use
of agrochemicals. The objective of this work was the identication and
morphological characterization of marine actinomycetes as antagonists to
Fusarium solani (Mart.) Sacc. Fusarium spp. was isolated from diseased
tomato plants and mangrove sediment actinomycetes, both identied through
taxonomic keys and molecular techniques. Eight isolates of Fusarium
spp. were obtained, H8 being the most virulent and it was identied as F.
solani. Thirty actinomycetes were isolated, of which only four inhibited the
phytopathogen, being A19 the one that inhibited the fungus by 70% and was
identied as Streptomyces sp. Marine actinomycetes may be an option for
disease management in plants of agricultural interest.
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2-7 |
Resumen
Fusarium spp. daña a las raíces de los cultivos, su control es con
fungicidas sintéticos, sin embargo, los actinomicetos marinos puede
ser una opción al uso de agroquímicos. El objetivo de este trabajo
fue la identicación y caracterización morfológica de actinomicetos
marinos como antagonistas a Fusarium solani (Mart.) Sacc. Fusarium
spp. fue aislado de plantas enfermas de tomate y los actinomicetos
de sedimento de manglares, ambos se identicaron a través de
claves taxonómicas y por técnicas moleculares. Se obtuvieron ocho
aislamientos de Fusarium spp., siendo H8 el más virulento y fue
identicado como F. solani. Se aislaron 30 actinomicetos, de los
cuales solo cuatro inhibieron al topatógeno, siendo A19 el que
inhibió en un 70% al hongo y fue identicado como Streptomyces sp.
Los actinomicetos marinos pueden ser una opción para el manejo de
enfermedades en plantas de interés agrícola.
Palabras clave: Streptomyces, Nocardiopsis, antagonismo, Solanum
lycopersicum.
Resumo
Fusarium spp. danica as raízes das lavouras, seu controle é feito
com fungicidas sintéticos, no entanto, os actinomicetos marinhos
podem ser uma alternativa ao uso de agroquímicos. O objetivo
deste trabalho foi a identicação e caracterização morfológica de
actinomicetos marinhos como antagonistas a Fusarium solani (Mart.)
Sacc. Fusarium spp. foi isolado a partir de tomateiros doentes e
actinomicetos de sedimento de manguezais, ambos foram identicados
por meio de chaves taxonômicas e técnicas moleculares. Foram
obtidos oito isolados de Fusarium spp., sendo H8 o mais virulento
e identicado como F. solani. Foram isolados 30 actinomicetos,
dos quais apenas quatro inibiram o topatógeno, sendo A19 o que
inibiu o fungo em 70% e foi identicado como Streptomyces sp. Os
actinomicetos marinhos podem ser uma alternativa efetiva para o
manejo de doenças em plantas de interesse agrícola.
Palavras-chave: Streptomyces, Nocardiopsis, antagonismo, Solanum
lycopersicum.
Introduction
Tomato (Solanum lycopersicum L.), is an important crop in many
regions of the world (Reyes-Pérez et al., 2018). This crop is susceptible
to Fusarium spp. (Li et al., 2018), which, causes losses close to 80%
of production (Akbar et al., 2016). The symptoms of plants with
Fusarium spp. are; defolation, wilting and yellowing of leaves, and
stem and root necrosis (Summerell et al., 2003). Fusarium spp. is
controlled by synthetic fungicides such as: Mancozeb, Benomil,
Carbendazim, among others (Gadhave et al., 2020), However, its
application causes resistance to fungi and negative effects on the
environment, human and animal health (Torres-Rodriguez et al.,
2021). The search for alternatives to decrease the use of synthetic
fungicides in agriculture is a priority worldwide (Maluin and Hussein,
2020).
The use ofactinomycetes as biocontrol agents towards
phytopathogens is an alternative to the application of agrochemicals
(Wang et al., 2018). Among the antagonistic mechanisms of
actinomycetes are, antibiotics, siderophores, induction of host
resistance, hydrolytic enzymes, among others (Gopalakrishnan et al.,
2021; Igarashi et al., 2021; Shen et al., 2021). Actinomycetes from
terrestrial environments have been extensively studied, however,
actinomycetes from marine environments are an understudied
resource, which may be more efcient in controlling plant
phytopathogens (Gong et al., 2018). Mangroves are ecosystems that
are found in tropical and subtropical intertidal regions worldwide
(Sangkanu et al., 2017). In these ecosystems, salinity and nutrient
availability are highly variable, resulting in unique characteristics
for the isolation of marine actinomycetes (Soldan et al., 2019). The
objective of this work was the identication and morphological
characterization of marine actinomycetes as biocontrol agents against
Fusarium solani.
Materials and methods
Isolation and morphological identication of Fusarium spp.
Roots of tomato plants with Fusarium symptoms were collected
from a commercial orchard located in El Carrizal, Baja California
Sur, Mexico at 23°47’00” north latitude and 110°17’40” west latitude.
Root pieces of 5 mm were disinfected with 2% sodium hypochlorite
for 30 sec. They were washed with sterile distilled water and dried on
absorbent paper. After, they were sown in Petri dishes with potato-
dextrose-agar (PDA, Difco 39 g.L
-1
) plus streptomycin (0.1 g.L
-1
)
and ampicillin (0.1 g.L
-1
) and were incubated at 28 °C for 6 days in
complete darkness. Colonies were puried in Petri dishes with PDA
and stored in slant tubes at 4 °C. Fungal sporulation was determined
(+++ abundant, ++ good, + moderate) (Sivakumar et al., 2018) and
for macroscopic and microscopic identication the taxonomic keys of
Summerell et al. (2003) were used.
Pathogenicity test
The concentration of each fungus was adjusted to 1.10
6
conidia.mL
-1
using a Neubaüer chamber. Tomato seedlings var.
Saladet of 25 days, were immersed in conidia suspension of each
isolation for 15 min, prior to transplantation. As a control, plants
were immersed in sterile distilled water. The plants were kept at
28 °C, 80% relative humidity (HR) and 12 h light in a growth
chamber (Convairon
®
) for 26 days. The severity of the disease was
determined using the Marlatt scale et al. (1996)'; 1=plants
without symptoms; 2=slight chlorosis and wilting; 3=moderate
chlorosis and wilting; 4=severe chlorosis and wilting; 5=dead
plant. In addition, we quantified; height, stem diameter, root fresh
weight and disease incidence (%DI) (Saravanakumar et al., 2016)
using the formula: %DI= (PI/TP)×100%, where Pi=number of
infected plants and TP=total plants. Koch’s postulates were
tested. Five replicates (seedlings) per treatment were performed
and the experiment was repeated twice.
Molecular identication a nd p hylogenetic a nalysis of
Fusarium spp.
The ex
traction of DNA was carried out according to
the methodology of Ochoa et al. (2007). The ITS1-5.8s-
ITS2 region of rDNA was amplied using primers ITS1
(5’ TCCGTAGGTGAACCCTGCGG 3’) and ITS4 (5”
TCCTCCGCTTATTGATATGC 3”) (White et al., 1990). A thermal
cycler (Applied Biosystems®) was used with a denaturation period of
3 min at 95 °C, followed by 30 cycles (denaturation at 95 °C for 1 min,
alignment for 30 s at 50 °C and an extension of 1 min at 72 °C), with
a nal extension at 72 °C for 10 min. PCR products were sequenced
in Genewiz®. Phylogenetic analysis was performed with the MEGA
7 program (Kumar et al., 2018) with the maximum parsimony (MP)
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method, using the Kimura-2 parameter model (Tamura, 1992) and
Gama distribution and 10,000 replicates (bootstrap). The MP tree was
obtained using NNI (Nearest-Neighbor-Interchange).
Isolation and identication of marine actinomycetes
Sixteen samples of marine mangrove sediment were collected
from four sampling sites in the Zacatecas estuary located in La
Paz, Baja California Sur, Mexico at 24°9’30” north latitude and
110°25’37” west latitude. The collection was performed at a distance
of 0-1, 1-3 and 3-5 m from the shoreline, at a depth of 25 cm.
Sediment samples were collected with a 10 cm diameter soil auger.
The central portion of the samples was extracted with the help of
a sterile spoon. The samples were dried at room temperature for 7
days. One g of sample was weighed and suspended in 9 mL of sterile
seawater, it was incubated for 20 min in water bath at 60 °C and the
solution was serially diluted to 10
-6
(Palla et al., 2018). It was added
1 mL of each dilution to 15 mL of malt extract yeast agar medium
(ISP2; malt extract 10 g, yeast extract 4 g, dextrose 4 g, agar 20 g,
seawater 1 L, pH 7.2). Plates were incubated at 28 °C for 15 days.
Each colony was puried in ISP2 and maintained in 20% glycerol at
-80 °C. Actinomycetes were identied with the keys of Shirling and
Gottlieb (1966) and Gram staining (Duraipandiyan et al., 2010).
In vitro antagonism of marine actinomycetes vs. F. solani
A 0.5 cm disc of each actinomycete grown in ISP2 was placed
in Petri dishes with PDA 1 cm from the edge of the plate and in
the center a 0.5 cm disc of F. solani from a 7-day culturein PDA.
A group of Petri dishes were inoculated with a reference strain of
terrestrial origin cataloged as ED48 of Streptomyces sp. provided
by the Centro de Investigación y Asistencia en Tecnología y Diseño
del Estado de Jalisco, Mexico. Another group was inoculated with
the phytopathogen plus the fungicide Carbendazim (6 mg.mL
-1
) and
another group was inoculated only with F. solani. The plates were
incubated for 10 days at 28 °C. The percentage of radial growth
inhibition (RGPI, %) of the fungus was determined with the formula:
[(R1-R2)/R1]×100% where R1=radial growth of F. solani on the
control plate and R2=growth of F. solani in the direction towards the
actinomycete colony (Azadeh et al., 2010). Five plates per treatment
were used and the experiment was repeated twice.
Antimicrobial activity in actinomycete supernatants
Each actinomycete was cultivated in ISP2 at 30 °C for 7 days.
After, 5 mL of sterile water were added and the spores were scraped
and transferred to a 250 mL Erlenmeyer ask containing 50 mL of
starch casein broth and incubated at 150 rpm and 28 °C for 2 days.
The cells were harvested, washed and re-suspended in 25 mL of sterile
saline solution, subsequently, 10 mL of each inoculum was deposited
in a 250 mL ask containing 100 mL of nutrient broth (millet 10 g.L
-1
,
glucose 10 g.L
-1
, CaCO
3
2 g.L
-1
, NaCl 2.5 g.L
-1
, peptone 3 g.L
-1
, pH
7.2-7.4) and incubated at 150 rpm and 28 °C for 12 days. The medium
was centrifuged at 8000 x g. for 20 min at 4 °C, the supernatant was
passed through a 0.22 μm membrane lter and stored at 4 °C. It
was placed 1 mL of the supernatant from each actinomycete on a
sensidisc 1 cm from the edge of the Petri dishes with PDA and a
disk of F. solani was placed in the center. One group of Petri dishes
was inoculated with strain ED48, another group was inoculated with
the phytopathogen plus the fungicide Carbendazim (6 mg.mL-1) and
another group was inoculated only with F. solani. The percentage of
radial growth inhibition (RGPI, %) of the fungus was determined
with the formula: [(R1-R2)/R1]×100% where R1=radial growth of F.
solani on the control plate and R2=growth of F. solani in the direction
towards the actinomycete colony (Azadeh et al., 2010). Five plates per
treatment were used and the experiment was repeated twice.
Molecular identication and phylogenetic analysis of marine
actinomycetes
DNA was extracted using the modied Ochoa method et al. (2007).
PCR amplication of the 16S rRNA gene sequence was performed
using primers 27f (5′-AGAGTTTGATCCTGGCTCAG-3’) and
1492r (5′-GGTTACCTTGTTACGACTT-3’) (Wang et al., 2018). A
thermal cycler (Applied Biosystems®) was used with a denaturation
period of 3 min at 98 °C, followed by 30 cycles (denaturation at 94
°C for 1 min, alignment for 1 min at 52 °C and an extension of 1 min
at 72 °C), with a nal extension at 72 °C for 10 min. PCR products
were sequenced in Genewiz®. Phylogenetic analyses were performed
with the MEGA 7 program (Kumar et al., 2018) by the neighbor-
joining method using the Tamura-3 parameter model (Tamura, 1992)
and Gama distribution and 10,000 repeats (bootstrap).
Statistical analysis
Data were analyzed by one-way analysis of variance method
(ANOVA) using STATISTICA 10.0 software (software StatSoft,
Tulsa, OK) and Fishers LSD test was used (P<0.05) for separation
of means.
Results and discussion
Isolation and identication of Fusarium species
Eight isolates were obtained: H1, H2, H3, H4, H5, H6, H7
and H8 of Fusarium spp. that presented different morphological
characteristics, related to color, sporulation and mycelium (table 1).
According to Summerell et al. (2003) variability in morphology is
common among Fusarium species. Choi et al. (2018) report Fusarium
spp. colonies with diverse shapes, textures and colors. Duarte Leal
et al. (2016) observed red, violet, salmon and yellow Fusarium spp.
isolates. Macroconidia showed semi-curved, straight and slender
shapes, with 3 to 5 septa, with a blunt or papillate apical cell type
and foot-shaped basal cell or light notch. Microconidia were reniform
and fusiform in shape (table 2). Differences were found among
macroconidia and chlamydospores formed by the eight isolates,
according to Murugan et al. (2020) and Sivakumar et al. (2018), there
is variability among reproductive structures of Fusarium species.
Pathogenicity of Fusarium spp.
Of the eight Fusarium spp. isolates, only H3, H6, H7 and H8 were
pathogenic, observing 100% incidence in plants (table 3). Control
plants showed the greatest height, stem diameter and root fresh weight
because there is a relationship between Fusarium spp. pathogenicity
with decreased plant growth (Chang et al., 2018). It has been reported
that there is difference in virulence among isolates of Fusarium spp.
(Murugan et al., 2020). In this regard, Nirmaladevi et al. (2016)
observed variation in virulence of Fusarium spp. isolates, 45% were
highly virulent and 30% were moderately virulent. The pathogenicity
of Fusarium spp. is mediated by the action of lytic enzymes
(endopolygalacturonase, exopolygalacturonase, endoxylanase and
endopectate lyase) that depolymerize all cell wall components, such
as cellulose, pectins and proteins (extensins). In addition, these
enzymes serve to inactivate the plant's defense protein components,
such as chitinase and β-1,3-glucanase (Roncero et al., 2000).
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4-7 |
Table 1. Morphological characteristics of Fusarium spp. isolated from roots of Solanum lycopersicum L., in Baja California Sur, Mexico.
Isolation Color Sporulation Mycelium
H1 Gray + Sparse,white, aerial mycelium
H2 Light yellow + Abundant, white, cottony
aerial mycelium
H3 White to cream ++ Sparse, white, cottony, hyaline,
aerial mycelium
H4 White to cream +++ Dense, white, cottony, hyaline,
aerial mycelium
H5 Light yellow +++ Abundant, white, cottony
aerial mycelium
H6 Pale violet +++ Abundant, white pinkish,
occus, aerial mycelium
H7 Dark violet +++ Abundant, white pinkish,
occus, aerial mycelium
H8 Brown yellow +++ Abundant, white, cottony,
hyaline, aerial mycelium
Table 2. Characteristics of the reproductive structures of Fusarium spp. isolation.
Isolation
Macroconidia Microconidia
chlamydospore
Shape Septum Apical cell
Basal
cell
Shape Septum
H1 Semicurve 3 Blunt Foot shape Reniform 0 Paired, smooth wall
H2 Straight, slender 3-4 Blunt Light notch Reniform 0-1 ------------
H3 Semicurve 3 Blunt Foot shape Reniform 0 ------------
H4
Dorsiventral
curvature
4-5 Narrow Foot shape Reniform 0 Paired, smooth wall
H5 Semicurve 3 Blunt Light notch Reniform 0-1 Simple warty
H6 Dorsiventralcurvature 3-5 Papillate Foot shape
Reniform,
fusiform
0 Paired, smooth wall
H7 Dorsiventral curvature 3-5 Papillate Foot shape
Reniform,
Fusiform
0 Paired, smooth wall
H8 Semicurve 3-5 Blunt Foot shape
Reniform,
fusiform
0-1 Paired, smooth wall
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Torres-Rodriguez et al. Rev. Fac. Agron. (LUZ). 2022, 39(1): e2239155-7 |
Table 3. Severity of Fusarium spp. isolation and their effect on
growth variables in tomato.
Treatment Severity
*
Height (mm)
Stem
diameter
(mm)
Root fresh
weight (mg)
Control 0 233.6±11.3
a
4.1±0.3
a
55.0±4.3
a
H3 3 166.4±11.1
b
2.2±0.4
b
32.4±3.7
b
H6 4 125.2±,12.4
c
1.6±0.3
c
28.4±3.9
c
H7 4 129.1±11.7
c
1.6±0.3
c
27.8±4.1
c
H8 5 75.4±12.8
d
1.2±0.4
d
18.4±3.8
d
a, b, c, d
Different letters between columns differ signicantly according to Fisher
(P<0.05). Severity*: 1=plants without symptoms; 2=slight chlorosis and wilting;
3=moderate chlorosis and wilting; 4=severe chlorosis and wilting; 5=dead plant.
Molecular identication and phylogenetic analysis of
Fusarium sp.
The size of the PCR product of the ITS1-5.8s-ITS2 region of
isolate H8 was 550 bp. Its sequence was 100% identical to F. solani.
In the phylogenetic analysis, the ITS1-5.8s-ITS2 sequences were
grouped with F. solani as a single group (gure 1). Morphology of
the fungi allows their identication to the genus (Summerell et al.,
2003), however, the similarities in the reproductive structures make
their identication at the species level complex (Al-Fadhal et al.,
2019). Singha et al. (2016) observed differences in morphological
and molecular identication (ITS region) of Fusarium species. The
ITS region is studied for fungal identication due to the species
specicity of this region and provides better resolution at the
subspecies level and therefore, sequence analysis is a superior option
for phylogenetic studies (Okubara et al., 2005). The dendogram
indicated that the sequence obtained in the present study clustered
with other F. solani sequences. The colony morphology and
sequence of the ITS region of isolate H8, identied it as F. solani.
Figure 1. Phylogenetic tree based on the ITS1-5.8s-ITS2 region
of the H8 fungus isolated from tomato plants diseased
by Fusarium spp. Bootstrap values are indicated as
percentages over the nodes in this analysis (10,000
bootstrap).
Isolation and morphological identication of marine
actinomycetes
Thirty isolates of actinomycetes that showed differences in
mycelium, color, texture, shapewere obtained and were determined
as Gram-positive bacteria (table 4). The determination of the
characteristics of actinomycetes is important in the evaluation of
the diversity of the microbial community, these can be differentiated
based on texture, color, shape and elevation of colonies, among
others (Rathore et al., 2019). The morphological results are similar
to those reported by Goudjal et al. (2014), who obtained isolates
with coloration ranging from yellowish white to brownish gray.
Mangrove ecosystems are one of the habitats with a large number of
organisms (Barka et al., 2016; Sangkanu et al., 2017). Only 1% of
the species in these ecosystems have been studied and there is a lack
of knowledge about their ecological role and potential application,
especially in agriculture (Palla et al., 2018; Ameen et al., 2021).
Table 4. Morphological characteristics of marine actinomycetes
isolation.
Isolation Mycelium Mycelium color Texture Colony
A1 Substrate Yellowish gray Wrinkled/coarse Irregular
A2 Substrate Pale yellow Folded Irregular
A3 Substrate Yellowish gray Wrinkled Circular
A4 Aerial Dark yellow Creamy Irregular
A5 Substrate Yellowish gray Wrinkled Irregular
A6 Substrate Light yellow Wrinkled Circular
A7 Substrate Pale yellow Folded Circular
A8 Aerial Pale yellow Creamy Punctiform
A9 Substrate Light yellow Wrinkled Irregular
A10 Substrate Gray Wrinkled Irregular
A11 Substrate Red Creamy Irregular
A12 Substrate Yellow Creamy Irregular
A 13 Substrate Light yellow Creamy Circular
A 14 Substrate Dark brown Wrinkled Irregular
A 15 Substrate Light pink Creamy Circular
A 16 Substrate Light gray Creamy circular
A 17 Aerial Dark gray Creamy Irregular
A 18 Aerial Yellow Creamy Circular
A 19 Substrate Yellow Folded Rhizoid
A 20 Aerial Dark gray Creamy Irregular
A 21 Substrate Light yellow Creamy Punctiform
A 22 Substrate White Creamy Circular
A 23 Aerial Yellow Creamy Punctiform
A 24 Substrate Light pink Creamy Circular
A 25 Aerial Dark yellow Creamy Irregular
A 26 Aerial Dark gray Creamy Irregular
A 27 Substrate Light yellow Wrinkled Circular
A 28 Aerial Yellow Creamy Circular
A 29 Substrate Yellow Creamy Circular
A 30 Substrate Yellow Folded Circular
In vitro antagonism tests of marine actinomycetes against
F. solani
Only four isolates showed antifungal activity (A20, A19, A18
and A15) against F. solani. A19 showed the highest antagonistic
activity with a RGPI (Percentage of radial growth inhibition) of
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Rev. Fac. Agron. (LUZ). 2022, 39(1): e223915. January - March. ISSN 2477-9407.
6-7 |
72%, which did not show difference with the synthetic fungicide.
A15 showed the lowest RGPI with 39.53% (gure 2a). Only A19
and A18 showed an effect on supernatant. A19 showed a RGPI of
44.92% and it did not show difference with ED48 (gure 2b).
Figure 2. In vitro antagonism of marine actinomycetes against
F. solani. (a) Percentage of radial growth inhibition
(RGPI) of actinomycetes against F. solani. (b) RGPI of
actinomycetes supernatants against F. solani. Synthetic
fungicide= Carbendazim (6 mg.mL
-1
). n= 5. ± Standard
Desviation. Equal letters in the columns do not differ
signicantly according to Fisher (P<0.05).
Actinomycetes from terrestial environments have been widely
studied as biocontrol agents against phytopathogens (Benhadj et al.,
2019). Therefore, isolation of actinomycetes from under-researched
environments such as marine, glacial, saline, among others, will
provide new biocontrol agents that can be applied in agriculture
(Gong et al., 2018). Several species of Streptomyces have been used
for the control of soil phytopathogens (Ling et al., 2020). Among
the bioactive compounds they produce are: hydrolytic enzymes and
actinomycins, which are antibiotics belonging to the chromopeptide
lactone family that function as growth inhibitors (Chen et al., 2020).
Nocardiopsis species exhibit antifungal activity against Fusarium
species and produce various antimicrobial metabolites (Intra et
al., 2011). The antagonistic activity of actinomycetes against plant
pathogens depends on their ability to produce hydrolytic enzymes,
antifungal metabolites, competition for nutrients, siderophores,
among others (Igarashi et al., 2021; Shen et al., 2021; Vurukonda
et al., 2018).
Molecular identication and phylogenetic analysis of marine
actinomycetes
PCR products of the 16S region were 1500 bp in size. A19 and
A20 were 99.56% similar to Streptomyces sp. and A15 and A18
to Nocardiopsis lucentensis (99.50%). Phylogenetic analysis of the
16S gene of A20 grouped it together with Streptomyces griseoavus
and A19 was grouped in the Streptomyces sp. clade. Phylogenetic
analysis of A18 and A15 grouped them with Nocardiopsis
lucentensis (gure 3).
The 16s rRNA gene is found in prokaryotic organisms and
archaeobacteria and its eukaryotic counterpart exists, its size is
1500 bp and it presents a high degree of conservation to distinguish
between taxa, even at deep taxonomic levels (Clarridge, 2004).
Based on colony morphology and 16s rRNA gene sequence, A20 was
identied as Streptomyces griseoavus, isolate A19 as Streptomyces
sp. and isolates A15 and A18 as Nocardiopsis lucentensis.
Figure 3. Phylogenetic tree based on the 16S rRNA gene of
actinomycetes A20, A19, A18 and A15 isolated from
marine environments. Bootstrap values are given
as percentages over the nodes in this analysis (10,000
bootstrap).
Conclusions
Thirty isolates of marine actinomycetes were obtained, of which
Streptomyces sp., S. griseoavus and Nocardiopsis lucentensis
showed in vitro antifungal activity against F. solani. Streptomyces sp.
showed the highest antifungal activity against the phytopathogenic
fungus with a (RGPI) of 72%. Marine environments are a new
source for isolation of microorganisms that can be used as biocontrol
agents against phytopathogens.
Acknowledgement
J. A. Torres-Rodriguez thanks the Consejo Nacional de Ciencia
y Tecnología-México for Grant 2021910046. J. J. Reyes-Pérez and
L. G. Hernandez-Montiel were thesis co-directors.
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